Research Methods
 
 

ORGANISMS INVESTIGATED:

Mice, rats, guinea pigs, cats & humans (EEG & anatomy)


RECORDING METHODS:

Macroelectrode registration:

Cochlear microphonics, summating potentials, compound action potentials, brainstem response audiometry, electromyography; Electroencephalographic recordings with low-impedance electrodes and a high-density human EEG system (128 channels, BrainAmps)


Microelectrode registration:

High-density microelectrode recordings (up to 1024 electrodes). Multiunit & local field potentials registration with microelectrode arrays, single cell registration using glass microelectrodes of high impedance.


STIMULATION:

Auditory, visual & somatosensory stimulation, cochlear implant stimulation, laser stimulation; calibration of acoustic equipment


DATA ANALYSIS:

Recoding signal conditioning, unit activity analysis including spike sorting, peristimulus time analysis, interval histogram analysis, synchronization analysis (to stimulus and between recording sites), spike-field coherence, connectivity analysis (phase relation, Granger causality, transfer entropy), frequency analysis of local field potentials (Fourier & wavelet), PCA & ICA, current source density analysis and many more.

In human EEG we additionally localize brain source of neuronal activity using different approaches, including sLORETA and beam forming.


HISTOLOGY:

Flourescence digital microscopy, confocal microscopy and STED microscopy; Histological processing of nervous tissue and the cochlea, including standard staining techniques (Nissl, Golgi, COX), use of fluorescent tracers (DiI, DiO, fluoro ruby, fluoro emerald, diamino yelow) and immunohistochemistry (SMI-32, GFAP, parvalbumin). In vivo µCT (XtremeCT, Scanco Medical). 3D reconstructions using data obtained from serial sections, µCT imaging or grinding (using Amira and MatLab).

 

 








Above: Multielectrode recordings allow registration of several neurons at the same time. Using that approach functional „couplings“ within a neuronal assembly can be investigated. Complex correlational analysis of neuronal activity are necessary to reveal such functional relations.





methods used in our laboratories:

Monoclonal antibody staining in the cortex.

Recording equipment includes three Neuralynx microelectrode amplifiers (two Cheetah 64-channel systems, one digital 128-channel, onother digital 256-channel system), two Alpha-Omega microelectrode amplifiers (128-channel and 32-channel) and three 4-channel auditory and 6-channel cochlear implant stimulation systems based on National Instruments MIO- and DIO-Boards controlled via CVI (Otoconsult Comp., Germany) and MatLab (programmed by P. Hubka, R. Land and A. Kral).

Multielectrode array recording in the auditory cortex shown as raster plots (left) and post-stimulus time histograms (right).

Brain sources of the N1 components of auditory-evoked response in EEG.

Time-frequency response in a complex listening task (Stroop task) reveals brain activity extending over 2 seconds after the brief auditory stimulus

SMI-32 staining in the cat auditory cortex. Left: original image. Right: AI-based extraction of individual pyramidal neurons for quantitative analysis.

MicroCT-based analysis of the trajectory for molecular therapies in the human auditory nerve. A-C: Different trajectories tested. Amira-based 3D reconstruction of the trajectory shown in C. Reconstruction and images by Dr. P. Baumhoff. From Caye-Thomasen et al., 2025.


Download the reconstructed movie (mp4)

Amira-based 3D reconstruction of a µCT of a guinea pig cochlea. 

Leica STED microscope in confocal mode allows to visualize the guinea pig cochlea in 3D and reconstruct the spiral ganglion.

Source localization of mouse EEG signals using beam-formers used for identifying origins of mouse ABRs. From Wang et al., 2025.